| Intein Name |
CroV Pol |
| Prototype Allele |
Tli Pol-2 |
| Extein Name |
DNA polymerase (alpha or family B) |
| Intein Class |
Theoretical |
| Organism Name |
Cafeteria roenbergensis virus BV-PW1 |
| Organism Description |
taxon:693272, Giant virus infecting marine heterotrophic nanoflagellate |
| Domain of Life |
Eucarya |
| Endonuclease Activity |
|
| Endo Motif |
DOD |
| Location in Extein |
D799 |
| Insert Site Comments |
pol-c, Pol Motif C |
| Intein Size (aa) |
347 |
| Intein N-terminal |
VFNPIIKYGD/S |
| Intein C-terminal |
HN/TDSIFSCYQY |
| Accession No. |
ADO67531 in NCBI/protein,locus_tag="crov497 |
| Intein aa Sequence |
>ADO67531.1 GI:309386671 | CroV Pol intein (including -1 and +1 extein residues)
DSVIGDTPLLLKNKFTNEILINKIKDLSSNWSNYHNGKESCEIDTYQTWTETGWTDIKRVIRHKLESNKKLLKIQTHNGE
VIVTDEHSLLNKNGKTINAKNVKVGDNILHSFPSYINNIDNTNSINYHNKFYNKKMCNELAYILGCFMKYGLCDSSKKCF
TINNKDINLIESLKKMCENIFDEFKWKISSSSHLSDNIYKLVPFQNEIKLIDFIKYFTNKMYNNGEKKVPQCILNSSKEY
IKIFLIGLYPEYKLENNQQFIYTCKNNEFSLGIYYLIKKLGYHVKLNSNDSSDSSDSIYTFEISHKLENNNNVITKITEW
EHKETYVYDLTTENHHFHAGVGSIIVHNT |
| Block A |
SVIGDTPLLLKNF 13 |
| Block B |
NGEVIVTDEHSLLN 90 |
| Block C |
|
| Block D |
EKKVPQCI 232 |
| Block E |
FLIGLYPEYK 252 |
| Block H |
CKNNEFSLGIYYLIKKLGY 280 |
| Block F |
YVYDLTT***ENHHFH 337 |
| Block G |
GSIIVHNT 348 |
| Initially Contributed by |
Matthias G. Fischer |
| Contributor's Address |
University of British Columbia
6339 Stores Road
Vancouver, BC, Canada
V6T 1Z4 |
| Contributor's Phone No. |
|
| Contributor's FAX No. |
|
| Contributor's Email address |
mfischer@eos.ubc.ca |
| Independently Found By |
|
| Comments |
DOD Endo Motifs are not clear, suggesting this may be a degenerating endonuclease (FP) |
| Date Submitted |
11/24/2010 |
| References |
Fischer 2010 |
