| Intein Name |
Tko RFC |
| Prototype Allele |
Mja RFC-1 |
| Extein Name |
Replication factor C |
| Intein Class |
Theoretical |
| Organism Name |
Thermococcus kodakaraensis KOD1 |
| Organism Description |
Thermophile, taxon:69014 |
| Domain of Life |
Archaea |
| Endonuclease Activity |
|
| Endo Motif |
DOD |
| Location in Extein |
K59 |
| Insert Site Comments |
RFC-a, ATP/GTP-binding site motif A (P-loop) |
| Intein Size (aa) |
540 |
| Intein N-terminal |
LFAGPPGVGK/C |
| Intein C-terminal |
HN/TTAALALARE |
| Accession No. |
YP_184631 in NCBI/protein, TK2218 |
| Intein aa Sequence |
>gi|57642153|ref|YP_184631.1|[57642153] Tko RFC intein (including -1 and +1 extein residues)
KCLTGDAKVIANGRLFELGELVEKVSKGRFGPTPVEGLKVLGIDEDGKLREFEVQYVYKDRAERLIKVRTRLGRELKVTP
YHPLLVNRKNGEIMWVKAEELRPGDRLAVPRFLPAIAEEDPLAEWLGYFIGDGHADSKNKVITFTNTDPSLRQRFMELTE
RLFPDAKIRERIHKNRAPDVYVNSRRAWELVSSLGLAGRKADKVYIPEKGWEGIRSFLRAYFDCDCGVDKNAVVLATASR
EMAEQVTYALAGFGITSKIREKKVRGKTYYHVTISGSENLERFLSEIGFSHREKLERTLKLVKKPNPNLDSLNVNYELIS
YVRDRLKLNFSDDKRSWSHRKARKISWELMKEIYYRLDELERLKESLSRSILIDWNEMAERRKEIAEKTGIRADRLLEYI
KGKRKPSLRNYIKIAKALGIDLEPTINAMRVFARKYSSYAEIGRKLGTWNSSVRIILESNTEKIKELEEIRKIELELIGE
ILSDEKLKEGVAYLIFLSQNELYWDEITEVKELKGDFVIYDLHVPGYHNFIAGNMPTVVHNT |
| Block A |
CLTGDAKVIANGR 13 |
| Block B |
GRELKVTPYHPLLV 85 |
| Block C |
WLGYFIGDG 132 |
| Block D |
KVYIPEKG 202 |
| Block E |
FLRAYFDCDA 225 |
| Block H |
TASREMAEQVTYALAGFGI 254 |
| Block F |
VIYDLHV**PGYHNFI 530 |
| Block G |
MPTVVHNT 541 |
| Initially Contributed by |
Fran Perler |
| Contributor's Address |
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| Contributor's Phone No. |
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| Contributor's FAX No. |
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| Contributor's Email address |
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| Independently Found By |
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| Comments |
Formly called Pyrococcus kodakaraensis. |
| Date Submitted |
02/28/2005 |
| References |
Fukui 2005 |
