| Intein Name |
Mesp-FS406 PolB-1 |
| Prototype Allele |
Pko Pol-1 |
| Extein Name |
DNA polymerase Pol2,DNA polymerase family B |
| Intein Class |
Theoretical |
| Organism Name |
Methanocaldococcus sp. FS406-22 |
| Organism Description |
Taxon:644281 |
| Domain of Life |
Archaea |
| Endonuclease Activity |
|
| Endo Motif |
DOD |
| Location in Extein |
R421 |
| Insert Site Comments |
pol-a, Pol Motif A |
| Intein Size (aa) |
359 |
| Intein N-terminal |
EDIISMDFR/C |
| Intein C-terminal |
HN/SLYPSIIISY |
| Accession No. |
ZP_06214852.1 in NCBI protein, /locus_tag="MFS40622DRAFT_1784" |
| Intein aa Sequence |
>ZP_06214852.1 GI:270497887 | Mesp-FS406 PolB-1 intein (including -1 and +1 extein residues)
NSILPDEYLTVIEEDGVKIIKIGDYIDDLMRKHKDKIKYDGLSEILEVDNLKTYSFNRKTKKCSINRVKALIRHPYSGKA
YKIKLRSGRTIKVTEDHSLFKFEKGRPVCVRGDEIQPGDLIVVPRKLKFVNKKDVIINIPKRLVDADEEELKDLTITKHK
DKEFLVRLRKTLEDIKNNKLKIIFDDCISYLENLGLIDYSIIKKINKIDIKILDEEKFDAYKKYIDTFVEYGTFRKDRCN
IQYIRIKDYIPNIPDKEFEDCEIGAYSGKINALLKLDEKLAKFLGYFVTRGRLKKLKIKGETVYEISVYKSLPEYQKEIA
EVFKEAFGAGSIAKDKVTMDNKIIYLVLKYIFKCGNRDKKHIPEEIFLANENIIKSFLEGFLKAKKNSHKGTTTFMAKDE
KYLHQLILLFSLVGIPTRFTPVKNKGYKLTLNPNYTIVEDLMLDEVKEVEAFDYTGYVYDLSVEKYENFLINNIYAHNS |
| Block A |
CHPKGTKVVVKGR 13 |
| Block B |
VNGLKCTPNHKIPL 64 |
| Block C |
|
| Block D |
|
| Block E |
|
| Block H |
|
| Block F |
KVYDLTL**EGRPYYF 351 |
| Block G |
NGILTHNS 360 |
| Initially Contributed by |
SUNTHARAJ GOKULNATH & AZHWAR RAGHUNATH |
| Contributor's Address |
Department of Bioinformatics, School of Life Sciences, Bharathidasan University, Tiruchirappalli - 620 024
Tamilnadu
INDIA |
| Contributor's Phone No. |
+91-9944310533 |
| Contributor's FAX No. |
|
| Contributor's Email address |
raghu_lifescience@hotmail.com |
| Independently Found By |
|
| Comments |
This gene appears to have a duplication of Pol Motif B or is misassembled. |
| Date Submitted |
02/19/2010 |
| References |
|
