| Intein Name |
Hwa RCF |
| Prototype Allele |
Mja RFC-1 |
| Extein Name |
Replication factor C |
| Intein Class |
Theoretical |
| Organism Name |
Haloquadratum walsbyi DSM 16790 |
| Organism Description |
Halophile, taxon:362976, strain: DSM 16790 = HBSQ001 |
| Domain of Life |
Archaea |
| Endonuclease Activity |
|
| Endo Motif |
|
| Location in Extein |
K61 |
| Insert Site Comments |
RFC-a, ATP/GTP-binding site motif A (P-loop) |
| Intein Size (aa) |
323 |
| Intein N-terminal |
LFAGPAGVGK/C |
| Intein C-terminal |
HN/TTAATAIAHA |
| Accession No. |
YP_659332 in NCBI/protein, /locus_tag="HQ3671A |
| Intein aa Sequence |
> YP_659332.1 GI:110669521 | NC_008212.1 | Hwa RCF intein (including -1 and +1 extein residues)
KCVTGSTPILTNKGIRQIGEIVGDVDGFAPAPQNLKVCSLTADGSFQYRHPSHVFGKRASGLQRIKTNDGATLTVTPEHK
LLIRTGENTNPTWVPAADITAGMHVLRAKNLPIPAETTGSCAASKNASEVSHIGDEYRYHDSLMADVNTRIATLERLIED
YAESRSDGSLKFTLIGAHTPTVSTVSYLLATVGIASRHTSTLIDSEKRVHAIIIDASDTVRLEEMIETDWDTVMADQTTT
VTSSSTASTTKTTQSYLSSGETQTCGWIPYADGGVTHPSTQHSPLHADVVTVSESLDAEKRVYDLTVPGVRNYVGGCIPT
VMHNT |
| Block A |
CVTGSTPILTNKG 13 |
| Block B |
GATLTVTPEHKLLI 82 |
| Block C |
|
| Block D |
|
| Block E |
|
| Block H |
|
| Block F |
RVYDLTV**PGVRNYV 313 |
| Block G |
IPTVMHNT 324 |
| Initially Contributed by |
Fang Fang, Xie Jun |
| Contributor's Address |
|
| Contributor's Phone No. |
|
| Contributor's FAX No. |
|
| Contributor's Email address |
xiejun@fudan.edu.cn |
| Independently Found By |
|
| Comments |
The sequence between blocks B and F lack similarity to known homing endonuclease families. |
| Date Submitted |
07/27/2007 |
| References |
Bolhuis 2006 |
