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Mesp-FS406 PolB-3 Intein
Intein Name Mesp-FS406 PolB-3
Prototype Allele Tli Pol-1
Extein Name DNA polymerase Pol2,DNA polymerase family B
Intein Class Theoretical
Organism Name Methanocaldococcus sp. FS406-22
Organism Description Taxon:644281
Domain of Life Archaea
Endonuclease Activity
Endo Motif DOD
Location in Extein N1373
Insert Site Comments pol-b, Pol Motif B
Intein Size (aa) 488
Intein N-terminal EQKSLKILAN/S
Intein C-terminal HN/SVYGYLAFPR
Accession No. ZP_06214852.1 in NCBI protein, /locus_tag="MFS40622DRAFT_1784"
Intein aa Sequence >ZP_06214852.1 GI:270497887 | Mesp-FS406 PolB-3 intein (including -1 and +1 extein residues)
NSILPNQWMPIVEDNDIKFVKIDNYINQLMDRNKYKIKFDGNSEILEVDNLKAFSFNRQSKKCEIKRVKALIRHKYSGKA
YKIKLRSGREIEVTMGHSLFKYENGKIVEVKGEDVKVDDLIVVPKSIVAIEEDITINIPKVLAKLDDDSLILEIPKEKRN
EIKKKISTIKDKSLRKFYELILKHSKYTKNGNYIIKLSKVKDIIDYIPDKEFINFKIGTRGGKRINAIIKLDEDVAKFLG
YYVSEGYARCSKNQKNGYSYEIYIANHDKDILKDMERVTTKIFDKCKVCKDRVRVMSKIAYLFVNYVVPCGIKAENKQIP
EIIFKAKKSIKLAFLEGYFIGDGDIHPSKRLRLSTKSEKLAYQLMFLLNSLGISAVKIGFDSGVYRVYINEDLPFITTNR
KRNKYYSNVIPKEILEYIFNKKFQNNMSIDKFKEFIKDKDINGFEWLLNGDITFDRVKEIEEFDYNGYVYDLSVEDNENF
LINNIYAHNS
Block A SILPNQWMPIVED 13
Block B GREIEVTMGHSLFK 100
Block C FLGYYVSEG 245
Block D NKQIPEII 322
Block E FLEGYFIGDG 342
Block H TKSEKLAYQLMFLLNSLGI 372
Block F YVYDLSV**EDNENFL 480
Block G NNIYAHNS 489
Initially Contributed by SUNTHARAJ GOKULNATH & AZHWAR RAGHUNATH
Contributor's Address Department of Bioinformatics, School of Life Sciences, Bharathidasan University, Tiruchirappalli - 620 024
Tamilnadu
INDIA
Contributor's Phone No. +91-9944310533
Contributor's FAX No.
Contributor's Email address raghu_lifescience@hotmail.com
Independently Found By
Comments This gene appears to have a duplication of Pol Motif B or is misassembled.
Date Submitted 02/19/2010
References

Last database update: 11/05/10

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