| Intein Name |
Pab RFC-2 |
| Prototype Allele |
Mja RFC-3 |
| Extein Name |
Replication factor C |
| Intein Class |
Theoretical |
| Organism Name |
Pyrococcus abyssi |
| Organism Description |
Thermophile, strain Orsay, taxon:29292 |
| Domain of Life |
Archaea |
| Endonuclease Activity |
|
| Endo Motif |
DOD |
| Location in Extein |
S647 |
| Insert Site Comments |
RFC-c |
| Intein Size (aa) |
608 |
| Intein N-terminal |
FSSNVRFILS/C |
| Intein C-terminal |
HN/CNYSSKIIEP |
| Accession No. |
C75198 in NCBI/protein, PAB0068 |
| Intein aa Sequence |
>gi|7514225|pir||C75198| Pab RFC-2 intein (including -1 and +1 extein residues)
SCVTGDTKVYTPDEREVKIRDFMNYFENGLIKEVSNRIGRDTVIAAVSFNSRIVGHPVYRLTLESGRIIE
ATGDHMFLTPEGWKQTYDIKEGSEVLVKPTLEGTPYEPDPRVIIDIKEFYNFLEKIEREHNLKPLKEAKT
FRELITKDKEKILRRALELRAEIENGLTKREAEILELISADTWIPRAELEKKARISRTRLNQILQRLEKK
GYIERRIEGRKQFVRKIRNGKILRNAMDIKRILEEEFGIKISYTTVKKLLSGNVDGMAYRILKEVKEKWL
VRYDDEKAGILARVVGFILGDGHLARNGRIWFNSSKEELEMLANDLRKLGLKPSEIIERDSSSEIQGRKV
KGRIYMLYVDNAAFHALLRFWKVEVGNKTKKGYTVPEWIKKGNLFVKREFLRGLFGADGTKPCGKRYNFN
GIKLEIRAKKESLERTVEFLNDVADLLREFDVDSKITVSPTKEGFIIRLIVTPNDANYLNFLTRVGYAYA
KDTYARLVGEYIRIKLAYKNIILPGIAEKAIELATVTNSTYAAKVLGVSRDFVVNRLKGTQIGITRDFMT
FEEFMKERVLNGYVIEKVIKKEKLGYLDVYDVTCARDHSFISNGLVSHNC |
| Block A |
CVTGDTKVYTPDE 13 |
| Block B |
GRIIEATGDHMFLT 78 |
| Block C |
VVGFILGDG 301 |
| Block D |
GYTVPEWI 388 |
| Block E |
FLRGLFGADG 408 |
| Block H |
ERTVEFLNDVADLLREFDV 451 |
| Block F |
DVYDVTC**ARDHSFI 600 |
| Block G |
NGLVSHNC 609 |
| Initially Contributed by |
Joël Quérellou |
| Contributor's Address |
Ifremer, BP 70
29280 Plouzane
France |
| Contributor's Phone No. |
33 2 98 22 40 01 |
| Contributor's FAX No. |
33 2 99 22 46 00 |
| Contributor's Email address |
Jquerell@ifremer.fr |
| Independently Found By |
|
| Comments |
Maximum reported size for an intein with 608 aa ; additional fragment
between blocks B and C, with 20 basic residues among 71 (Quérellou). |
| Date Submitted |
06/26/1999 |
| References |
Lecompte 2001
Henneke 2002
Cohen 2003 |
