| Intein Name |
She RPB2 (RpoB) |
| Prototype Allele |
Cst RPB2 |
| Extein Name |
DNA-directed RNA polymerase beta subunit |
| Intein Class |
Theoretical |
| Organism Name |
Stigeoclonium helveticum, strain UTEX 441 |
| Organism Description |
Green alga, chloroplast gene, taxon:55999 |
| Domain of Life |
Eucarya |
| Endonuclease Activity |
|
| Endo Motif |
DOD |
| Location in Extein |
H578 |
| Insert Site Comments |
RPB2-b |
| Intein Size (aa) |
390 |
| Intein N-terminal |
LVHLVDEKIH/C |
| Intein C-terminal |
GN/SRSSGPYSLI |
| Accession No. |
ABF60213 in NCBI/Protein |
| Intein aa Sequence |
>ABF60213 in NCBI/Protein | She RPB2 intein (including -1 and +1 extein residues)
HCLTVDHEVLTTKGWIPLNKVKTSHFVATLKKNGQLVYQNPTNIYHYPEFKGELYHIKNVNLDLLVTLNHRMYVKNGIIE
ATSSVDYQLIPAKDIVGQHKKYCKTAFWDKENYQFILPSVISNSIVIPEKTMNMEAWLQFFGIWIAEGWALTNTISNNNV
TNFNQSSSSPYVVQISIKKKKVLEILNNVIPILGYSFNYYDNNITICDKQLWAYLRPLSLGNPYRKLPIWVWDLSQDQAR
VLLLAMITVFKNGTNSKWEKAASLSSRLSLASVFPEFLKKRIDKGLSYYTSSVELADDISRLALHAGWSGNNYLLKKKGS
ISSFDGKQIICQFDIWRISIIQSKNQPAVNHGYHSKGKEEVLPYQGAVYCLSVPNEIFYVRRNGLSVWTGNS |
| Block A |
CLTVDHEVLTTKG 13 |
| Block B |
NLDLLVTLNHRMYV 83 |
| Block C |
FFGIWIAEG 147 |
| Block D |
YRKLPIWV 230 |
| Block E |
|
| Block H |
TSSVELADDISRLALHAGW 307 |
| Block F |
AVYCLSV***PNEIFY 378 |
| Block G |
LSVWTGNS 391 |
| Initially Contributed by |
Tim Goodwin, Margi Butler, Russell Poulter |
| Contributor's Address |
|
| Contributor's Phone No. |
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| Contributor's FAX No. |
|
| Contributor's Email address |
timg@sanger.otago.ac.nz |
| Independently Found By |
|
| Comments |
|
| Date Submitted |
11/04/2006 |
| References |
Belanger 2006 |
|
